VISDB Viral Integration Site DataBase

VIS ID

TVIS44018562

Fusion event

HTLV-1-POGK integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q24.1

Reference genome

Start

End

166810307/166841070 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-130b-3p ; hsa-mir-218-5p ; hsa-mir-93-5p ; hsa-mir-18a-5p ; hsa-mir-935 ; hsa-mir-296-3p ; hsa-mir-99a-5p ; hsa-mir-17-5p ; hsa-mir-577 ; hsa-mir-4425 ; hsa-mir-450a-1-3p ; hsa-mir-92a-1-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-3674 ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6770-5p ; hsa-mir-4773 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6516-5p ; hsa-mir-29b-2-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-490-5p ; hsa-mir-8068 ; hsa-mir-5692a ; hsa-mir-1295b-5p ; hsa-mir-1912 ; hsa-mir-4645-5p ; hsa-mir-4650-5p ; hsa-mir-4673 ; hsa-mir-5701

Nearest miRNA

hsa-mir-101-1/Upstream/686272; hsa-mir-1182/Downstream/1157590;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/963, chr1-CpG: 84/Downstream/34689

Upstream sequence

CTACCCTCTCAATTTGAGCCTGAAAGAAGAGGAAGAGGAAGAAGAGATTCAGAGCCGGGAACTAGAGGACGGCCCGGCAGACATGCAGAAAGTACGAATC

Downstream sequence

TGCTCTGAGGGCGGATGGGTAAGTAAGAAGGTGTGGAGTCCACACAGCCAGCAGATGCAGGCCTGAGAGCCCAGCTTGCTTTAAGTCTCCTCCTCAGACA