Basic Information
VIS ID
TVIS44018612
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
218393774/218220432 (Hg38)
End
218393774/218220432 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/6142747; hsa-mir-1182/Downstream/1897421;
Nearest TSS
ENST00000473358/Upstream/176927; ENST00000491428/Downstream/64855;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/54741, chr1-CpG: 55/Downstream/64245
Nearby gene
RRP15(+64855) ;
Upstream sequence
tagtagttacttgataaatgtatgtATCAGTAAGAAATTTCATGTACATATACATTCCATTACCCCAAGTCAgatggcagggactcccttagatttgtct
Downstream sequence
gtatctatcttcagtgcctagaaaaggtatgaatagatgctcaataaatattagttgGTTGTCTAATTTCCTGAGTTTAATAGTTTTACAACAatataat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate