Basic Information
VIS ID
TVIS44018615
Fusion event
HTLV-1-LOC105372926 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
219982291/219808949 (Hg38)
End
219982291/219808949 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372926
Nearest miRNA
hsa-mir-101-1/Upstream/7731264; hsa-mir-1182/Downstream/308904;
Nearest TSS
ENST00000473358/Upstream/195804; ENST00000490891/Downstream/110081;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/195729, chr1-CpG: 116/Downstream/118841
Nearby gene
RNU5F-1(-64328) ;
Upstream sequence
GCTAGCTGAGGCACAATTTTTCCAACAGGCAAAGTTGGCCCCGAGTTCCCTTGCAACTCCCGTCTGCACCTATCCTTCTTCTTCTAATCAAGCACCCTCC
Downstream sequence
AGGTAGGTCTCCCTGCAGACTGATGGATTCCAGGGCTCCCAACGGGCCCCGCCCAGTCCTGCTTTGCTTAATGATCACTCACATTCTCTAACTCTCATTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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