VISDB Viral Integration Site DataBase

VIS ID

TVIS44018626

Fusion event

HTLV-1-SNAP47 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q42.13

Reference genome

Start

End

227966658/227778957 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4783-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-4448 ; hsa-mir-5095 ; hsa-mir-1292-3p ; hsa-mir-4267 ; hsa-mir-6736-3p ; hsa-mir-4438 ; hsa-mir-5004-3p ; hsa-mir-8068 ; hsa-mir-4445-5p ; hsa-mir-4422 ; hsa-mir-548e-5p ; hsa-mir-7855-5p ; hsa-mir-488-3p ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-27b-5p ; hsa-mir-1273f ; hsa-mir-6730-5p ; hsa-mir-5681a ; hsa-mir-4766-5p ; hsa-mir-512-3p ; hsa-mir-6888-5p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-4428 ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-578 ; hsa-mir-4312 ; hsa-mir-627-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-1229-3p ; hsa-mir-1285-5p ; hsa-mir-129-5p ; hsa-mir-216a-5p ; hsa-mir-3672 ; hsa-mir-4524a-3p ; hsa-mir-6511a-3p ; hsa-mir-6511b-3p ; hsa-mir-6784-3p ; hsa-mir-6862-3p ; hsa-mir-6864-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-101-1/Upstream/1856815; hsa-mir-1182/Downstream/162633;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/43227, chr1-CpG: 31/Downstream/7770

Upstream sequence

TTTCTGCCAGCTCCCGAGGGTGTAGAAGCCCTGCTGTCTGGGACTGGGGCTCTAGTCAGGCATTTATTCATCTGTCTTATGACAAATATCTCAGCAGGAA

Downstream sequence

GGCCAGGTTTGGAAAGGGACATGTGGCTCATTTCACCTCTGCCGTGTGCCTGTGAGTGACCTCAGCCCCCAACTCCCTGTGCCATCTGCAGAGGGGCTGG