Basic Information
VIS ID
TVIS44018632
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
233853782/233718036 (Hg38)
End
233853782/233718036 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/93817; hsa-mir-1537/Downstream/588431;
Nearest TSS
ENST00000473358/Upstream/62341; ENST00000366617/Downstream/186897;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/103232, chr1-CpG: 118/Downstream/186671
Nearby gene
KCNK1(+45524) ;
Upstream sequence
ggggaaagatgtgcttctaactcacacattatattgtgagtagttctactgagagacctgcatatcaaggaattgatgtcaccagccaaatagccagcag
Downstream sequence
gtgggcttcagttcctcgccagctgttggctggtgacatcaattccttgatatgcaggtctctcaatggaactactcacaacatagcagcttggtttcca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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