VISDB Viral Integration Site DataBase

VIS ID

TVIS44018647

Fusion event

HTLV-1-WASF2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

27734791/27408297 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-146a-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-7-5p ; hsa-mir-26b-5p ; hsa-mir-1224-5p ; hsa-mir-940 ; hsa-mir-877-3p ; hsa-mir-425-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-4713-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-627-3p ; hsa-mir-5003-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-629-3p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4279 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-1343-5p ; hsa-mir-143-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-1914-3p ; hsa-mir-197-3p ; hsa-mir-214-3p ; hsa-mir-3173-3p ; hsa-mir-3184-5p ; hsa-mir-3610 ; hsa-mir-3612 ; hsa-mir-3619-5p ; hsa-mir-3944-5p ; hsa-mir-412-3p ; hsa-mir-423-5p ; hsa-mir-4261 ; hsa-mir-4300 ; hsa-mir-4424 ; hsa-mir-4487 ; hsa-mir-4514 ; hsa-mir-4690-5p ; hsa-mir-4692 ; hsa-mir-4695-5p ; hsa-mir-5188 ; hsa-mir-5194 ; hsa-mir-541-3p ; hsa-mir-5582-5p ; hsa-mir-5591-5p ; hsa-mir-6072 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-654-5p ; hsa-mir-6721-5p ; hsa-mir-6726-5p ; hsa-mir-6728-3p ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6754-3p ; hsa-mir-6891-3p ; hsa-mir-6891-5p ; hsa-mir-761 ; hsa-mir-875-3p ; hsa-mir-920 ; hsa-mir-939-5p ; hsa-mir-96-3p ; hsa-mir-1276 ; hsa-mir-1910-5p ; hsa-mir-216b-3p ; hsa-mir-24-3p ; hsa-mir-3120-3p ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-3614-5p ; hsa-mir-3677-5p ; hsa-mir-4264 ; hsa-mir-4286 ; hsa-mir-4304 ; hsa-mir-4311 ; hsa-mir-4438 ; hsa-mir-451b ; hsa-mir-455-3p ; hsa-mir-4696 ; hsa-mir-484 ; hsa-mir-5095 ; hsa-mir-583 ; hsa-mir-626 ; hsa-mir-6873-5p ; hsa-mir-6876-3p ; hsa-mir-7151-3p ; hsa-mir-8064 ; hsa-mir-9500 ; hsa-mir-1304-3p ; hsa-mir-1307-3p ; hsa-mir-3615 ; hsa-mir-4284 ; hsa-mir-4512 ; hsa-mir-4638-5p ; hsa-mir-4757-5p ; hsa-mir-505-5p ; hsa-mir-6741-3p ; hsa-mir-6744-3p

Nearest miRNA

hsa-mir-12136/Upstream/853704; hsa-mir-101-1/Downstream/3330859;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/15452, chr1-CpG: 55/Downstream/81534

Upstream sequence

CCAGTCGTCCTCATCAAATTCAGAGGAGTCATCTTCTGAGTCACTGTACTCAACAGCAATGCGACGAGACAAGATGGTGGCCACGTCATTGCCCACAACA

Downstream sequence

TCCCGCTTCTCTTGTTCCCGCTGCTCCTCAACCCTGCGCAGCTGAAAACCTAGTGGCAAAGAGACAGAAGGGTGAGGAAGGCGTGTCCTCAGCCTTGGAA