Basic Information
VIS ID
TVIS44018655
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
30798682/30325835 (Hg38)
End
30798682/30325835 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/3771242; hsa-mir-101-1/Downstream/413321;
Nearest TSS
ENST00000473358/Upstream/185572; ENST00000420354/Downstream/85803;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/847108, chr1-CpG: 101/Downstream/392290
Upstream sequence
cagtgtaaatgaccacgtgtacagtcaccatctggactcactgcgtctgctgatgggacttggaggcaaggaactggccctatggtgctgatggcactat
Downstream sequence
tgtttgctgagctgggggtgataaactccgttgattttatttctctgatccattaagtctctctccattcagcatctgtggagttgcgTGGTCATCTCCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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