VISDB Viral Integration Site DataBase

VIS ID

TVIS44018671

Fusion event

HTLV-1-SLC2A1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.2

Reference genome

Start

End

43398042/42932371 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1262 ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-320a ; hsa-mir-149-5p ; hsa-mir-3653-5p ; hsa-mir-1291 ; hsa-mir-4531 ; hsa-mir-6842-3p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-3135b ; hsa-mir-1225-3p ; hsa-mir-4638-5p ; hsa-mir-4747-3p ; hsa-mir-4323 ; hsa-mir-3064-5p ; hsa-mir-6504-5p ; hsa-mir-2909 ; hsa-mir-6772-3p ; hsa-mir-6514-3p ; hsa-mir-1200 ; hsa-mir-1296-5p ; hsa-mir-6882-3p ; hsa-mir-4448 ; hsa-mir-4268 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-6761-5p ; hsa-mir-6870-3p ; hsa-mir-1914-5p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-4267 ; hsa-mir-5586-5p ; hsa-mir-3184-3p ; hsa-mir-22-3p ; hsa-mir-148b-3p ; hsa-mir-132-3p ; hsa-mir-150-5p

Nearest miRNA

hsa-mir-12136/Upstream/2174999; hsa-mir-101-1/Downstream/239281;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/7491, chr1-CpG: 148/Downstream/25425

Upstream sequence

CCCCACCCTGGCCAGCTCCCACGGATGTGGTAGGCAGGCAGCACCCGTTCTGCCTGAGCACACTCACCACACTCTCAGTGCCATGGGACTGGCCAGACCC

Downstream sequence

ACCCAGCCACACGTATAGCAGAGTGCAGGCCCTAGTTACCCAGAAACGGCTTCTTATGCACGTATACCATCACACACACATACCCGTGCTCATAGAATCT