VISDB Viral Integration Site DataBase

VIS ID

TVIS44018673

Fusion event

HTLV-1-BTBD19 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.1

Reference genome

Start

End

45278682/44813010 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-7977 ; hsa-mir-4291 ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-4795-5p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-5588-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4690-5p ; hsa-mir-498 ; hsa-mir-6778-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-10b-3p ; hsa-mir-5571-5p ; hsa-mir-1267 ; hsa-mir-129-5p ; hsa-mir-1304-3p ; hsa-mir-143-5p ; hsa-mir-1909-5p ; hsa-mir-3135a ; hsa-mir-3664-5p ; hsa-mir-3672 ; hsa-mir-367-5p ; hsa-mir-4423-5p ; hsa-mir-4524a-3p ; hsa-mir-4639-3p ; hsa-mir-4774-3p ; hsa-mir-4797-5p ; hsa-mir-5007-5p ; hsa-mir-645 ; hsa-mir-6501-5p ; hsa-mir-6794-3p ; hsa-mir-6864-3p ; hsa-mir-744-3p ; hsa-mir-8055 ; hsa-mir-8077

Nearest miRNA

hsa-mir-12136/Upstream/267458; hsa-mir-101-1/Downstream/6246827;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/6364, chr1-CpG: 82/Downstream/83

Upstream sequence

CAGGCTTGCAGTGGTGGGTCCCAGTGAGCAGGCTGGGCTACGGCCTCTCCAGTCTCCAACCTGATCTCCCTCATTCTGCTCGCAGGTGGCCGTAACCTTT

Downstream sequence

GGCCTGGGGCAGCTGCAGGAGCGCTGCGTGGCTTTCATAGAGGCCCACAGCCAGGTACTGCTCCCTTCATACTCCTCACCCTACGCACCGCATTCTGCTC