Basic Information
VIS ID
TVIS44018718
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
88742421/88276738 (Hg38)
End
88742421/88276738 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/1919051; hsa-mir-11399/Downstream/5570094;
Nearest TSS
ENST00000473358/Upstream/7563; ENST00000436111/Downstream/52345;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/941189, chr1-CpG: 63/Downstream/185862
Nearby gene
PKN2-AS1(No orient, 260775)
Upstream sequence
CCTGGTCATTTTTAAGTAACACAAGTATAAAAAGATAAAGCTAGGAGTCTCAGAAGCATTCCCCCTACAAATAGTTCTGAAGGCACATGATTTTAATTAC
Downstream sequence
ATAGAAAATCAGTCAAGTGATTGGTCCACGTAGAATCAGAATATTTGGGGTGGCTGGAAGAAAAAGGTAAAAATAATGAAGTTATTTAAATTCCACCTAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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