Basic Information
VIS ID
TVIS44018763
Fusion event
HTLV-1-LOC107985817 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
120765663/120008087 (Hg38)
End
120765663/120008087 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC107985817
Nearest miRNA
hsa-mir-1285-2/Upstream/6286719; hsa-mir-10b/Downstream/7415450;
Nearest TSS
ENST00000437798/Upstream/47263; ENST00000466241/Downstream/4918;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/247653, chr2-CpG: 102/Downstream/4734
Nearby gene
EPB41L5(+4941) ;
Upstream sequence
CAGTCTCCAAGAGAACTGATTCTTATGTCGGAATTCTCTCTAAGCCAATCTGTTCAGCATACTTTGACACGAATGAATGGCCTCACCAGGGTGGACCAGT
Downstream sequence
TCAGAGAAGGCTGACTAAGGAAGCAAAGAGCCTGGAAATCAgaacaagagaagattttgcaggcttgggacaagtgtcttcaatgatttaaagggttgtg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate