Basic Information
VIS ID
TVIS44018787
Fusion event
HTLV-1-ARHGAP15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
144398662/143641093 (Hg38)
End
144398662/143641093 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
ARHGAP15
miRNAs that regulate target gene
hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-6807-5p ; hsa-mir-4698 ; hsa-mir-586 ; hsa-mir-5700 ; hsa-mir-3662 ; hsa-mir-4764-3p ; hsa-mir-3134 ; hsa-mir-4495 ; hsa-mir-1246 ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-8087 ; hsa-mir-6750-3p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa
Nearest miRNA
hsa-mir-128-1/Upstream/3054408; hsa-mir-10b/Downstream/5689185;
Nearest TSS
ENST00000437798/Upstream/43091; ENST00000549060/Downstream/7792;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1510109, chr2-CpG: 111/Downstream/295670
Upstream sequence
GGTTGCCTTTCCAGGACCTGGTGTGACAACCATCATCATGAAGTTTGTGATGTCTTGCAGTGGAACAACTGCAGCTGCAAAGCATCCTGAAGGCTGTTCC
Downstream sequence
AACTTACGCTGTTAAACAGTACTCACTTTTGACATAAGAGGGTCCATTACTGTATTTATGAACCTCTTGGCACCAGATTGGGGATTTCCCAATGCGAAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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