Basic Information
VIS ID
TVIS44018842
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
227198879/226334163 (Hg38)
End
227198879/226334163 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/1323623; hsa-mir-1244-1/Downstream/324547;
Nearest TSS
ENST00000437798/Upstream/148792; ENST00000607970/Downstream/461083;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/751148, chr2-CpG: 74/Downstream/457024
Nearby gene
LOC646736(No orient, 154101)
Upstream sequence
gagctgagatcacattactgcactccagcctgggcaacagaataagactccatctcaaaaaaagaaagaataaaaaTACTCATTCTCTATAATCACATAA
Downstream sequence
AATATGTCTCCTCTTTCCAAAACTATGGCATTGCCCTTCCAAAGTGGAAATCAAACTAGGGAACAGAGACTTACAGAAGCTGAAAACTGGTAACTTTAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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