Basic Information
VIS ID
TVIS44018896
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
60133380/59906245 (Hg38)
End
60133380/59906245 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/3905450; hsa-mir-10b/Downstream/481117;
Nearest TSS
ENST00000437798/Upstream/172849; ENST00000444873/Downstream/193955;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1477268, chr2-CpG: 103/Downstream/554442
Nearby gene
MIR4432HG(No orient, 452971)
Upstream sequence
CTTTCTTCATTCTCCCACTTCTTCTCTCCCCGCCAGAAACAAAAGATGGATAAGACACACATGGTGACTAGGTTTTTAGTGCCTATTGATGATCAATAGC
Downstream sequence
TATGTATAATATAAATTGTGTTTGTGTCACAGAGGGTCAACAGACGGCAAGCTTTGCAGAATTCAGCACTTTCAGGCCTCAGGCTTCAACACTCCAGTAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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