Basic Information
VIS ID
TVIS44018941
Fusion event
HTLV-1-C2orf92 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
98298945/97682482 (Hg38)
End
98298945/97682482 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S ; FRA2A
Target gene
C2orf92
Nearest miRNA
hsa-mir-1285-2/Upstream/884129; hsa-mir-10b/Downstream/3626968;
Nearest TSS
ENST00000437798/Upstream/6661; ENST00000599666/Downstream/6443;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/18074, chr2-CpG: 64/Downstream/41452
Upstream sequence
ataaataagaactaacaccagtcctcaaacccttccaagaagctgaagaggaagaaacacttcctggcttactctaagaggccagtatggagtatggccc
Downstream sequence
tgataccaaaggcagacaaagtcactacaagaagactaaaaacaaatgtctcttgtaaatataaacagaaaaatcctcaacagaacattagcaaaccaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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