Basic Information
VIS ID
TVIS44018990
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
128260663/128541820 (Hg38)
End
128260663/128541820 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/954644; hsa-mir-12124/Downstream/304988;
Nearest TSS
ENST00000440867/Upstream/48635; ENST00000491681/Downstream/31909;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/43758, chr3-CpG: 80/Downstream/13273
Nearby gene
LINC01565(No orient, 30180)
Upstream sequence
actgtaagcttcttgaggcctccccagaagccaagcagatgccagcaccatgcttgtacagcctgcagaaccatgaaccaattaaacctcttttctttat
Downstream sequence
aaattacccagtctcaggtatttctttataacaatgcaagaaaagctgaatataCCTCCCCACTGGAGCACTAGCCCCAGACCTGTCACAAGTCAGATGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate