Basic Information
VIS ID
TVIS44019017
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
147082404/147364617 (Hg38)
End
147082404/147364617 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/12926711; hsa-mir-1224/Downstream/4201259;
Nearest TSS
ENST00000440867/Upstream/442654; ENST00000462168/Downstream/6039;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/4732, chr3-CpG: 210/Downstream/26107
Nearby gene
ZIC4(-21431) ;
Upstream sequence
CCCACTTTGCTGTGACTACGAGCCCTGGTGAGTGAAAAAAGTGAAAGGGAGATAGCCATGTGCTCTTCTCCAAAGAGAACTCCAGAGAGGGATATGCTGA
Downstream sequence
CACTCTGGTAGGGAAGAAAGTTATGGAAGGAAGAGTCAGAGGGGAAGACACTTGAGGCAAGGTTCTCCAACACAGACTGAGGAGTTCAGATACCACCCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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