Basic Information
VIS ID
TVIS44019061
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q27.2
Reference genome
End
184789928/185072140 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-let-7g/Upstream/830651; hsa-mir-1248/Downstream/181070;
Nearby gene
C3orf70(No orient, 5910)
Upstream sequence
tcgcaatgtgaacacaccggtgtcaccagcacccagaggtcccctggattcctccatcgcaccacacccctcatgtgaaccacgaccctgattactagtg
Downstream sequence
tagatcgttgcgcctgtctggaatttggtaccaattgagttgtatatcaagccccccttgggaaatggcttctttcactcaacggtatgtctgtgtgact
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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