Basic Information
VIS ID
TVIS44019077
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
197835991/198109120 (Hg38)
End
197835991/198109120 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/434544;
Nearest TSS
ENST00000440867/Upstream/69886;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3231, chr3-CpG: 48/Downstream/4470
Nearby gene
ANKRD18DP(No orient, 28449)
Upstream sequence
CGTAGAAGGTCTCATTCCTGCATGCTTTCTTCAGCAGAGGGGGAGACGAGAAGGTCCTTTTAGGGGACACTTGCTGGGACATGCACTAACCCTTCTACAG
Downstream sequence
TTGGAGGGCTCCCACCTGCAGAGGCAGACTCTGCCGCAGTAGGAAGGGATGAGGCAGCTATTCTGAACCTGGAGCTCCACCACACCTTGCCCCGTCTCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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