VISDB Viral Integration Site DataBase

VIS ID

TVIS44019086

Fusion event

HTLV-1-ZNF860 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

p23

Reference genome

Start

End

32031482/31989990 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-7855-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-1273e ; hsa-mir-3190-3p ; hsa-mir-636 ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-4487 ; hsa-mir-6134 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-3192-5p ; hsa-mir-7851-3p ; hsa-mir-382-5p ; hsa-mir-490-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-3163 ; hsa-mir-574-5p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-6836-3p ; hsa-mir-4279 ; hsa-mir-2355-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-8062 ; hsa-mir-4328

Nearest miRNA

hsa-mir-12127/Upstream/828203; hsa-let-7g/Downstream/516293;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/8118, chr3-CpG: 101/Downstream/116344

Upstream sequence

GATACCTTGCATGCCATCATAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCAAGTCA

Downstream sequence

TCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTTAGTCGCAAATCAAATCTTGAAAGACATAGGAGAATTCATACT