Basic Information
VIS ID
TVIS44019090
Fusion event
HTLV-1-LOC100130207 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.2
Reference genome
GRCh37/hg19
Start
3744025/3702341 (Hg38)
End
3744025/3702341 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100130207
Nearest miRNA
hsa-let-7g/Downstream/1547836;
Nearest TSS
ENST00000440867/Upstream/75045; ENST00000472075/Downstream/95873;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/522408, chr3-CpG: 190/Downstream/96488
Nearby gene
LRRN1(+97096) ;
Upstream sequence
CTGCACGGCAACCAAATCTGAAGATACATTATAATGACAAACTTTTCTTCAATCCAAAATGAACATGCTTCGTTTCTTCATTTCCCTCTTGGTTTATATC
Downstream sequence
ATGTTAATCTCTTTTGATAAATTCAGACCAGTCTGGATCCAAATAATACAGAACATGTCCAGAGTGTCCCTGGGGTTTTCTTTCACCTCTTCCAGTTCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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