Basic Information
VIS ID
TVIS44019112
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
5126938/5085253 (Hg38)
End
5126938/5085253 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Downstream/164924;
Nearest TSS
ENST00000440867/Upstream/105021; ENST00000444332/Downstream/36967;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/58504, chr3-CpG: 32/Downstream/10610
Nearby gene
ARL8B(+36992) ;
Upstream sequence
gatctattgtctatttttatatcttttatgaaatgttacttctgccctttaaaaattggattagttgtctttttattattgaattacttatatatcctag
Downstream sequence
atgtaagtccttagtcacgggtatgttttgcaaatattttctcccagtctgtagcttgcctctgaattttcttttcttttgttttctttttttttttttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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