VISDB Viral Integration Site DataBase

VIS ID

TVIS44019122

Fusion event

HTLV-1-TASOR integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

p14.3

Reference genome

Start

End

56664736/56630708 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-125b-5p ; hsa-mir-34a-5p ; hsa-mir-16-5p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-6799-5p ; hsa-mir-3650 ; hsa-mir-4722-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4790-3p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-22-5p ; hsa-mir-3182 ; hsa-mir-671-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6507-3p ; hsa-mir-203a-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4649-3p ; hsa-mir-665 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-383-3p ; hsa-mir-1288-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-5694 ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-548at-5p ; hsa-mir-548c-3p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-4742-3p

Nearest miRNA

hsa-let-7g/Upstream/778114; hsa-mir-12124/Downstream/3987097;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/73513, chr3-CpG: 120/Downstream/51756

Upstream sequence

caaggcgggcacatcacctaaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctgggagtg

Downstream sequence

gtggcgggtgcctgcaatcccagctatttgggaggatgaggcaggagaattgcttgaccccagaaggcggaggttgcagtgagccaagatagtgccatta