Basic Information
VIS ID
TVIS44019177
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
89818089/89768939 (Hg38)
End
89818089/89768939 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/2542662; hsa-mir-12124/Downstream/6591025;
Nearest TSS
ENST00000440867/Upstream/661263; ENST00000478400/Downstream/4142218;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/653982, chr3-CpG: 39/Downstream/4204771
Upstream sequence
tggttttaatgtgcatttctgtaatgatctgtgatgttgagcttttttcttatgtttgttggccacataaatgttttcttttgagaagtgtctgttcatg
Downstream sequence
tcctttgaccactttttaatgaggttatttgcttctttcttgtaaatttcttgaagttccttgtagatcctggaaattagactttgtcaggtggatagat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate