Basic Information
VIS ID
TVIS44019213
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
11452447/11450823 (Hg38)
End
11452447/11450823 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-3138/Upstream/81902; hsa-mir-12113/Downstream/332355;
Nearest TSS
ENST00000502981/Upstream/21058; ENST00000515343/Downstream/18427;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/21191, chr4-CpG: 97/Downstream/2033075
Nearby gene
HS3ST1(-21910) ;
Upstream sequence
ctcattttcctcaaccctccagcagtatttaatgtggttaatccgtctttcttgacacgctatcattttttcctggaaacccgcctgcttctcttgccac
Downstream sequence
ccttgacccttgcctccttctcagttctccttgttcatttcttccttttgtacccaaactctaaatgttacactcccctcctagttacacttgcttttgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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