Basic Information
VIS ID
TVIS44019235
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
137026112/136104957 (Hg38)
End
137026112/136104957 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/10597650; hsa-mir-1305/Downstream/7238503;
Nearest TSS
ENST00000502981/Upstream/5717; ENST00000511749/Downstream/20952;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1160527, chr4-CpG: 24/Downstream/251098
Nearby gene
LINC00613(No orient, 191277)
Upstream sequence
gttatagtgaaggctccagttagttactgggagaattgcaatcatctagacaatgcatgtttgtgaaatagctcatttgccaatgatgacagataaaGAA
Downstream sequence
AGCAGAATTACTATATTAATTTCGGACAAATATTCTCAATTTAATAAAAAACGCTGACAGTTGTTCTGTTTTTTCTGTTTTAGTATCGAGGCTTTACATT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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