Basic Information
VIS ID
TVIS44019253
Fusion event
HTLV-1-LOC101927947 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
155039714/154118562 (Hg38)
End
155039714/154118562 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927947
Nearest miRNA
hsa-mir-12113/Upstream/1582046; hsa-mir-1305/Downstream/5010240;
Nearest TSS
ENST00000502981/Upstream/329442; ENST00000625026/Downstream/23560;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/325474, chr4-CpG: 39/Downstream/214416
Nearby gene
DCHS2(-115813) ;
Upstream sequence
gaccctcactagatgccagaaccttgatcttgaacttcccagcctcgagaactgagaaatttctgttctttataaattacttagcctcaggcactcatat
Downstream sequence
agcagcacaaaaacagactaaaacaCACATACTACACATATTTTGAAGAAATTTATAGAGGTAAAAGTTTATGTTGTCAACTTAAACGTATACTGTTTAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate