Basic Information
VIS ID
TVIS44019295
Fusion event
HTLV-1-LOC105377557 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
178200473/177279319 (Hg38)
End
178200473/177279319 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377557
Nearest miRNA
hsa-mir-12113/Upstream/2855455; hsa-mir-1305/Downstream/4889974;
Nearest TSS
ENST00000502981/Upstream/30546; ENST00000513321/Downstream/30517;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/486016, chr4-CpG: 42/Downstream/30377
Nearby gene
NEIL3(+30518) ;
Upstream sequence
CAGGGTACGGAGGTGACTTCTCTCAGAATGACTTCTGAAGTGGTCCCACTCAGGCTAGCTTCTGAGCATCTTTCTCCCTTCCAGTCACTTCCTAACATGA
Downstream sequence
GGGCAAGGATTTCCAAAGTTTTGGCCAAATAGATCAATTGTGTTTGTTTACTTATTTCTATGTATAAACTATCTTCTCAGCAAGCCCCCCATTATGTATG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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