Basic Information
VIS ID
TVIS44019375
Fusion event
HTLV-1-IGFBP7-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
End
58059574/57193408 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/4480661; hsa-mir-1243/Downstream/3729211;
Nearest CpG islands
Upstream sequence
CAGAGCCCAGGAGGAATTCTGGATGAAATATCAGCCAGGAGCAGGAGTGTGACAGCTGTAGGTCACTTGGGCCATAAAGTTAGTTAATGGGGAAGACAGA
Downstream sequence
TGAATGAGTGTATTGTGGCAACATATCAGAAGGTCTGAGGCATAAATAGTGTTGGAAAATAATAAGACAGTTGGTTCTTGAGGATCAACATTGCAGGGAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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