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Viral Integration Site DataBase
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TVIS44019391
Basic Information
VIS ID
TVIS44019391
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
70041171/69175453 (Hg38)
End
70041171/69175453 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2898525; hsa-mir-1243/Downstream/7398115;
Nearest TSS
ENST00000502981/Upstream/78934;
ENST00000504301/Downstream/6647;
Nearest CpG islands
None/Target,
chr4-CpG: 46/Upstream/825250
,
chr4-CpG: 55/Downstream/1512684
Nearby gene
UGT2B11
(-24880) ;
Upstream sequence
gaggaaggtggaggggagctgctacacacttttaaacaaccagatcttctgaaaactccatgacaagacagcacttggggggttgtcctaaaccattAGA
Downstream sequence
CGTAGAATGCCCTCAAACTTCtccattttacacaaacacttgcaaatggaagccccatgaagccaaaaaattgccccaatagagtttttctccttgtctt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#2
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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