Basic Information
VIS ID
TVIS44019391
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
End
70041171/69175453 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2898525; hsa-mir-1243/Downstream/7398115;
Nearby gene
UGT2B11(-24880) ;
Upstream sequence
gaggaaggtggaggggagctgctacacacttttaaacaaccagatcttctgaaaactccatgacaagacagcacttggggggttgtcctaaaccattAGA
Downstream sequence
CGTAGAATGCCCTCAAACTTCtccattttacacaaacacttgcaaatggaagccccatgaagccaaaaaattgccccaatagagtttttctccttgtctt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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