Basic Information
VIS ID
TVIS44019401
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
77079875/76158722 (Hg38)
End
77079875/76158722 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/9881794; hsa-mir-1243/Downstream/414846;
Nearest TSS
ENST00000502981/Upstream/10207; ENST00000515589/Downstream/4735;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/10203, chr4-CpG: 100/Downstream/54691
Nearby gene
SCARB2(-17) ;
Upstream sequence
tgaaatcagacatggcccaagtgtgtgactcagggcTGCATCTGTCAAGGAACATCTTTCCAGGGAAACTCCATAAACAACAGGACATCCAATGACATAT
Downstream sequence
GACTTCTAGAGCAATTTTATATAAAGTGGTTTTTTATTAATGAAACATTTCATTGCATTAAGGGTAGAAATAAACATGTCAAGAACCGCATGAAGTGAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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