Basic Information
VIS ID
TVIS44019429
Fusion event
HTLV-1-CCSER1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
92406250/91485099 (Hg38)
End
92406250/91485099 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4E
Target gene
CCSER1
miRNAs that regulate target gene
hsa-mir-544a
Nearest miRNA
hsa-mir-12113/Upstream/4184516; hsa-mir-1243/Downstream/7512288;
Nearest TSS
ENST00000502981/Upstream/159793; ENST00000505511/Downstream/402787;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/645983, chr4-CpG: 26/Downstream/697367
Upstream sequence
ACTACTGATTTACAATTCCATTCATAGGCTTGACATCTCAGACTGATCCAAGAGCCCTATACCTAATTTCTCAGCTAAAAGTCAATGTAGACTTGGATTC
Downstream sequence
ATTTCCTACTACATGGATAAAAAGCTATTTCCCATAACATTTCTTTGGTATGAAACAGTAAAAAAAAAATGAATAGGAAATGACAATAACCCAGCACCAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate