Basic Information
VIS ID
TVIS44019445
Fusion event
HTLV-1-FBXL17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
107521061/108185360 (Hg38)
End
107521061/108185360 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5F
Target gene
FBXL17
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-186-3p ; hsa-mir-548p ; hsa-mir-548b-3p ; hsa-mir-330-3p
Nearest miRNA
hsa-mir-10397/Upstream/7368795; hsa-mir-103a-1/Downstream/2328469;
Nearest TSS
ENST00000502646/Upstream/468519; ENST00000513676/Downstream/179407;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/512870, chr5-CpG: 220/Downstream/195248
Upstream sequence
ttgtaatcccaatgttggaggaagggcctgtttggaggtgattggatcatgggggcagatttaccccttgctgttctcctgataatgagttcgcacaaga
Downstream sequence
actggatgtctaaaaatgtgtagtacctcccacttcactcttttccttccttctctagccatgtaagaggtatctgctttttgccatgcttgtcagtttc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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