VISDB Viral Integration Site DataBase

VIS ID

TVIS44019463

Fusion event

HTLV-1-LMNB1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

q23.2

Reference genome

Start

End

126112880/126777188 (Hg38)

Orient

-

Location type

UTR5

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-124-3p ; hsa-mir-128-3p ; hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-101-3p ; hsa-mir-26b-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-190a-3p ; hsa-mir-3123 ; hsa-mir-3919 ; hsa-mir-4709-3p ; hsa-mir-5011-5p ; hsa-mir-5186 ; hsa-mir-600 ; hsa-mir-889-3p ; hsa-mir-548c-3p ; hsa-mir-651-3p ; hsa-mir-1301-3p ; hsa-mir-4660 ; hsa-mir-5047 ; hsa-mir-7156-3p ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-3065-3p ; hsa-mir-15a-3p ; hsa-mir-10b-3p ; hsa-mir-4529-5p ; hsa-mir-4753-5p ; hsa-mir-449c-3p ; hsa-mir-8086 ; hsa-mir-4766-5p ; hsa-mir-4724-5p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-3667-5p ; hsa-mir-6083 ; hsa-mir-6516-5p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-636 ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-6889-3p ; hsa-mir-3613-3p ; hsa-mir-4778-5p ; hsa-mir-3163 ; hsa-mir-506-3p ; hsa-mir-218-5p ; hsa-mir-8055 ; hsa-mir-1304-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-3928-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-138-2-3p ; hsa-mir-1248 ; hsa-mir-154-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4282

Nearest miRNA

hsa-mir-10397/Upstream/7622472; hsa-mir-103a-1/Downstream/2320500;

Nearest TSS

Nearest CpG islands

chr5-CpG: 202/Target, None/Upstream, None/Downstream

Upstream sequence

ggcttgcctccagcccgcccctcccggccctcctccccccgcccgccgctccgTGCAGCCTGAGAGGAAACAAAGTGCTGCGAGCAGGAGACGGCGGCGG

Downstream sequence

CGCGAACCCTGCTGGGCCTCCAGTCACCCTCGTCTTGCATTTTCCCGCGTGCGTGTGTGAGTGGGTGTGTGTGTTTTCTTACAAAGGGTATTTCGCGATC