Basic Information
VIS ID
TVIS44019478
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
135750904/136415216 (Hg38)
End
135750904/136415216 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/612141; hsa-mir-103a-1/Downstream/1232356;
Nearest TSS
ENST00000502646/Upstream/18174; ENST00000511165/Downstream/51461;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/57862, chr5-CpG: 134/Downstream/1083111
Nearby gene
TRPC7(-49740) ;
Upstream sequence
ctctggggtgggcagtgatttcctatagttctcatctgtggatcataccatgactctcttttgcttctccagccctcttgacaattttgtaacttaattc
Downstream sequence
tgtgtactaaatctctctctacttgaagtgtctagagtggtttctgCCTTTAAGATTAAATTATGGGCTCAAGAAAATCCCTAaaccccaactctatctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate