VISDB Viral Integration Site DataBase

VIS ID

TVIS44019497

Fusion event

HTLV-1-GALNT10 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

q33.2

Reference genome

Start

End

153580794/154201234 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-5004-5p ; hsa-mir-3127-5p ; hsa-mir-6832-3p ; hsa-mir-6823-5p ; hsa-mir-6847-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-1197 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-498 ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-6836-3p ; hsa-mir-7975 ; hsa-mir-670-5p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-676-5p ; hsa-mir-6752-3p ; hsa-mir-4646-3p ; hsa-mir-578 ; hsa-mir-4433b-5p ; hsa-mir-642a-5p ; hsa-mir-3655 ; hsa-mir-7110-3p ; hsa-mir-342-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-216b-3p ; hsa-mir-363-5p ; hsa-mir-4257 ; hsa-mir-4731-5p ; hsa-mir-4800-5p ; hsa-mir-5589-5p ; hsa-mir-637 ; hsa-mir-6745 ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6803-5p ; hsa-mir-6804-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-7110-5p ; hsa-mir-8071

Nearest miRNA

hsa-mir-10397/Upstream/2679086; hsa-mir-103a-1/Downstream/145872;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/10256, chr5-CpG: 33/Downstream/203847

Nearest cancer related gene

GALNT10(OG, No orient, 0)

Upstream sequence

caaacctgggcacttcaccctttcacacaactggccaggctgcaggagacattcgactttgggagccctCctttatgatatgcaaattcccataggcttt

Downstream sequence

tcccagttctgcctccaccagtatcacggtggaggcagggcagggcttacggtccccacttcacagatgcaaaaactgaggttcaaagagcataagtgac