Basic Information
VIS ID
TVIS44019530
Fusion event
HTLV-1-CDH18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
20345491/20345382 (Hg38)
End
20345491/20345382 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5E
Target gene
CDH18
miRNAs that regulate target gene
hsa-let-7e-5p
Nearest miRNA
hsa-mir-10397/Upstream/3189390; hsa-mir-103a-1/Downstream/11590720;
Nearest TSS
ENST00000502646/Upstream/39817; ENST00000514876/Downstream/230481;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/39555, chr5-CpG: 38/Downstream/1113978
Upstream sequence
TATAACtgctgctctgcttctgtggtaattctcacgataaggcaactttgccaaggatcccttaatccggaacacccaagggattatttacttccctaag
Downstream sequence
cagctatttttctgctaggatttaatgtctttcacaacgtgaaacagctttagccacaacattgctttcaaagtgattagcctattttgctttttattcc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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