Basic Information
VIS ID
TVIS44019569
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
5088624/5088511 (Hg38)
End
5088624/5088511 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/3379643; hsa-mir-10397/Downstream/1739342;
Nearest TSS
ENST00000502646/Upstream/10200; ENST00000511368/Downstream/51543;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/221994, chr5-CpG: 148/Downstream/50817
Nearby gene
LINC01020(No orient, 18509)
Upstream sequence
CTTTACACTGCTATTGTTTCGAATCAAATGATGGGTTGGTTAATGTGAATTTATATGCCTCATTCTTGCCAGTTTTCTCCCCAGAGATGAATTGTTATGT
Downstream sequence
TGAGAGTCTTAGCATTTATATGAGTCTTTTATTTTATGTGGTATTGGAatattgtggtttgtaataagaaatacatatttggtttctgctcctggtttct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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