Basic Information
VIS ID
TVIS44019578
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
5712828/5712715 (Hg38)
End
5712828/5712715 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/4003847; hsa-mir-10397/Downstream/1115138;
Nearest TSS
ENST00000502646/Upstream/289973; ENST00000568962/Downstream/309568;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/217451, chr5-CpG: 37/Downstream/174234
Nearby gene
ICE1(No orient, 222481)
Upstream sequence
tgaattggcccatgggtggccatggggggcccagaagagccaccacaagtccccactcccttccactggactggcagctggtccccagccttcaagccct
Downstream sequence
gaaggtagggccttactggggacctgaccctttccacccaggaatcaatctgcctcccactgccatttgtggcccccagattgggccccaacctcccact
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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