Basic Information
VIS ID
TVIS44019627
Fusion event
HTLV-1-LOC101929710 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
95543811/96208107 (Hg38)
End
95543811/96208107 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA5B
Target gene
LOC101929710
Nearest miRNA
hsa-mir-10397/Upstream/128895; hsa-mir-103a-1/Downstream/4608375;
Nearest TSS
ENST00000502646/Upstream/157992; ENST00000513926/Downstream/6968;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/245993, chr5-CpG: 18/Downstream/225063
Upstream sequence
cctggttcagtttgggaagttgtatgttttcatgaatttagctctttcttgcaggttttctagtttgtgtgcaggttttctagtttgtgtgcatacatgt
Downstream sequence
gttcataatagcctctgatttttttttttttctgtatttctgtggggtcagtggtaatgtcccctttgtcatttctgattgtgtttatttggatcttctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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