Basic Information
VIS ID
TVIS44019648
Fusion event
HTLV-1-ADTRP integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
11743811/11743578 (Hg38)
End
11743811/11743578 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADTRP
Nearest miRNA
hsa-mir-3691/Upstream/1303784; hsa-mir-10398/Downstream/4397978;
Nearest TSS
ENST00000381078/Upstream/6864; ENST00000412132/Downstream/22754;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/204882, chr6-CpG: 37/Downstream/265522
Upstream sequence
AGCCCCCTTGGCCTTCACATCACCTTACAGGGCTCAGTGGCCCTTAGCTGAATCCTGAAACTCCAGCAGGTGCCCTTTCTTGGCAGAACTGAAGGCTCCT
Downstream sequence
GTGCTCATTCCCATCATGACATAACACTCGTACGTTCGCCTAATACTGACCAAAGTCTTCCAGAGATGGAAACAACTCAAGGCTTAGGGTCACCATTTTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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