Basic Information
VIS ID
TVIS44019684
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
27601832/27634053 (Hg38)
End
27601832/27634053 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3143/Upstream/486365; hsa-mir-10398/Downstream/2950279;
Nearest TSS
ENST00000381078/Upstream/160935; ENST00000625477/Downstream/59982;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2686, chr6-CpG: 19/Downstream/45961
Nearby gene
LINC01012(No orient, 59982)
Upstream sequence
agtcagactattctaattgctgctttgactcctcagttcatcagggtcactacactcacctttcctttgatgactgagtgttttagatttactatttttc
Downstream sequence
tagatagaggcagctctaatggcttccatttggtctttcccaccatagcagccctcaccctaccagtcatggagccaatgtgagggttctgccagctgct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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