Basic Information
VIS ID
TVIS44019696
Fusion event
HTLV-1-LOC100507336 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
3603680/3603446 (Hg38)
End
3603680/3603446 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100507336
Nearest miRNA
hsa-mir-4645/Upstream/749339; hsa-mir-10398/Downstream/1544787;
Nearest TSS
ENST00000381078/Upstream/146424; ENST00000603791/Downstream/21301;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/145717, chr6-CpG: 233/Downstream/147108
Nearby gene
PXDC1(No orient, 119156)
Upstream sequence
tgatccctgggccctggaaaaatgctcaggtacaggggcagcagcagccacactgcagctctgctgctggggagagtggggttgctttcaatagtagcag
Downstream sequence
tcgtaggcagatggctgggaagtgtgcacttcggttccaggtggcggctgtgggtggcagagcctgaccttagggtgcttgtaagtgcacagtggcccct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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