Basic Information
VIS ID
TVIS44019698
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
36639006/36671229 (Hg38)
End
36639006/36671229 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/48717; hsa-mir-10398/Downstream/884136;
Nearest TSS
ENST00000381078/Upstream/70826; ENST00000462537/Downstream/3897;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/10009, chr6-CpG: 204/Downstream/7238
Nearby gene
PANDAR(No orient, 2392)
Upstream sequence
tccacgcattcactcagggatccaggctgatggaggctccaccatgttggagtggcaccattgcaccacctgggacatgagacctcacctttgccacaac
Downstream sequence
tgtgaaggacagaaaggctcgagaatttcacctggcctcagctctaaagagacaaatgtcacttatgctcacatttcatcagctaggactagtcgcatga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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