Basic Information
VIS ID
TVIS44019706
Fusion event
HTLV-1-TDRG1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
40346561/40378822 (Hg38)
End
40346561/40378822 (Hg38)
Orient
+
Location type
ncRNA_exonic
Fragile sites / regions
FRA6H
Target gene
TDRG1
Nearest miRNA
hsa-mir-1236/Upstream/1304441; hsa-mir-10398/Downstream/1219901;
Nearest TSS
ENST00000381078/Upstream/485; ENST00000470917/Downstream/208643;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/444262, chr6-CpG: 52/Downstream/13209
Nearest cancer related gene
TDRG1(TSG, No orient, 0)
Upstream sequence
AAGAATTCCATTCTCCCATCCCAGGAAGGAGAGTGCCCTGCGTGCCACGAAAGAGCCCAGGACCCACAGGACAAATACGTCACTGGCAGACCTGCCTTCG
Downstream sequence
CCAGCGCCAGCCCATCTCTGAAACCTCCAGCATTTGTGCCCCGGTCCGGCCCCTCCCAGGCCTGACTCTTTCCGTGTGGGTATTTTCCTCCTGGGCTCGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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