Basic Information
VIS ID
TVIS44019715
Fusion event
HTLV-1-LOC107986602 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48519228/48551492 (Hg38)
End
48519228/48551492 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986602
Nearest miRNA
hsa-mir-10398/Upstream/3353722; hsa-mir-10524/Downstream/3592857;
Nearest TSS
ENST00000381078/Upstream/482803; ENST00000335783/Downstream/911699;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/482598, chr6-CpG: 20/Downstream/911729
Nearby gene
PTCHD4(No orient, 482803)
Upstream sequence
CAGATTAATCGTCTTTCAATATGATGCTGTAAAAGAcgcaaactgagcaagggcagagctggtcagcatttaaatgagatttttccaaaggcaaattcaa
Downstream sequence
ggacccaaaatactctgagaaggaacgccagtattttcattactgaatcattttcctcttgagcataaggagacttccaagtgccctgaaagttattgta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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