Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene77453020773680027736939977410511
Basic Information
VIS ID
TVIS44019752
Fusion event
HTLV-1-LOC105377864 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
End
78120228/77410511 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/1982038; hsa-mir-10524/Downstream/1128752;
Nearby gene
HTR1B(-50337) ;
Upstream sequence
ATATTTTTTCTTTCTTGGGAATAGTGGAAGCTTAATTAATATATTTTTGAAATTATGTAACATCATATACCATCCAATCTGGTTTTCTTAGTACCTAGTG
Downstream sequence
TGCTAAGGGAATTTAGGATATTTTTGTACTATGTATTTGTCTTCTGTCCATATTTATTACATTCTTATAGCatttatattttaacttaaaattatagttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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