Basic Information
VIS ID
TVIS44019763
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
90607398/89897679 (Hg38)
End
90607398/89897679 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6G
Nearest miRNA
hsa-mir-10398/Upstream/11358370; hsa-mir-1202/Downstream/415063;
Nearest TSS
ENST00000381078/Upstream/3210; ENST00000458201/Downstream/22517;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/9745, chr6-CpG: 227/Downstream/397397
Nearby gene
GJA10(+1579) ;
Upstream sequence
caaagattagccaggtgtggttatgcatgcctgtagtcccagctacttgggaggatcacttgagcctggaaggttgaggctgcagtgagccatgatcatg
Downstream sequence
ccactgcactccagcttgggctacagactgagaccctgtctctaaaaaataaaaataaataaataaaaTAGAATTATTTGGCCAGTGGCAGCTACTTCTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate