Basic Information
VIS ID
TVIS44019776
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.31
Reference genome
GRCh37/hg19
Start
119709982/120069928 (Hg38)
End
119709982/120069928 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/3049609; hsa-mir-10399/Downstream/6988160;
Nearest TSS
ENST00000635602/Upstream/162553; ENST00000421825/Downstream/73068;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1855261, chr7-CpG: 93/Downstream/202858
Upstream sequence
agtggaactctggctgagctgagaagctaaacatcccagagctaagctgatgtagtaccccatgtcccataaaaatagagcagtggctcagctgccacat
Downstream sequence
ttcatcatacaggcgaaacatctctagtaccctgcttgcctggagctggactagcccccttaagcatgagctgctaagatacctccctccctgtggaatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate