Basic Information
VIS ID
TVIS44019786
Fusion event
HTLV-1-LOC105375523 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
135763711/136078963 (Hg38)
End
135763711/136078963 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375523
Nearest miRNA
hsa-mir-10525/Upstream/871885; hsa-mir-10399/Downstream/824204;
Nearest TSS
ENST00000635602/Upstream/53202; ENST00000445293/Downstream/13962;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/101439, chr7-CpG: 154/Downstream/790144
Nearby gene
MTPN(-101507) ;
Upstream sequence
gaacagctaatctttttctgagaaagaacttggctctggctgggggttatcccttggcctgtctctgcagggaggcgacaaaacttattttcaggcatat
Downstream sequence
gtcatttttcagtctcttcgttctaatttcttacccagtttagatgagccaaatcatacagctgtgcacttcacaggaacatagaatacctgctttccaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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